PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G024300.1.p
Common NameSETIT_029185mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 648aa    MW: 67519.8 Da    PI: 7.4201
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G024300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-16281340155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Seita.2G024300.1.p 281 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 340
                         78*******************988886678446*************************98 PP

2AP247.54.5e-15385434355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Seita.2G024300.1.p 385 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 434
                         9***************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-13281340IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16281349IPR016177DNA-binding domain
CDDcd000188.00E-20281348No hitNo description
Gene3DG3DSA:3.30.730.104.6E-16282349IPR001471AP2/ERF domain
SMARTSM003802.0E-29282354IPR001471AP2/ERF domain
PROSITE profilePS5103219.203282348IPR001471AP2/ERF domain
PRINTSPR003674.9E-6283294IPR001471AP2/ERF domain
CDDcd000181.13E-22383444No hitNo description
SuperFamilySSF541711.44E-17383443IPR016177DNA-binding domain
PROSITE profilePS5103219.19384442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18384442IPR001471AP2/ERF domain
SMARTSM003802.9E-33384448IPR001471AP2/ERF domain
PfamPF008479.5E-10385434IPR001471AP2/ERF domain
PRINTSPR003674.9E-6424444IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTNNSSSSNG NGTNAAASGW LGFSLSPHMA SAMDDHHQHQ HHVQQQQQHG LFFPSVTAAA  60
AAYGLGLGAG DAAAVAASAP SYYTPQLASM PLKSDGSLCI MEALRRSDQD HHGPKLEDFL  120
GAAQSQAMAL SLDNAAAAAA ASSFYYYGGG AGTGGHHHGF LQPCADLYGG PSAAALVADD  180
EATAAATAMA SWVAARASAA ESGVHSAAAA GHQHHHHALA LSMSSGSLSS CVTAHPGEYG  240
MVAAAGAGAM VDGGRKRGVA AGQKQPVHHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW  300
DNSCKKEGQT RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE DYQEELEEMK  360
NMTRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVSGNKDL YLGTFSTQEE  420
AAEAYDIAAI KFRGLNAVTN FDITRYDVDK IMASNTLLPG ELARRKKDDE VAAIAPADGG  480
AGGVTTAALA AAAHQAANGS AAAADTWKVA AALAAAEHGH GAHHHHHDVL SGAEAFSVLH  540
DLVTAADGGG HHGAGAAQHM PMSSASSLVT SLGNSREGSP DRGGGLSMLF SKPPAPAQQQ  600
QQQAANNKPM MSPLMPLGSW ASPASARGAA AAVSIAHMPV FAAWTDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699301.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-149ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLK3ZRF50.0K3ZRF5_SETIT; Uncharacterized protein
STRINGSi029185m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein